MDFactoryMDFactory

LipidSpecies

Represent a lipid species with head, tail, and branch atom annotations.

Attributes

attributehead_atomslist[int]
= Field(default_factory=list, description='0-based indices of head group atoms.')
attributetail_atomslist[int]
= Field(default_factory=list, description='0-based indices of tail group atoms.')
attributebranch_atomslist[int]
= Field(default_factory=list, description='0-based indices of branch point atoms.')
attributerdkit_moleculeChem.rdchem.Mol

Return an RDKit molecule with lipid-specific 3D coordinate generation.

Functions

funcmodel_post_init(self, _)None

Detect head, tail, and branch atoms from SMILES if not provided.

paramself
param_

Returns

None

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