User GuideTroubleshootingCommon issues grounded in the current code pathsInstallation issues Import errors after installationOpenMM import errors during build Configuration and sync Backend database or CSV file not initializedFoundry setup fails Build issues Bilayer validation errorsLarge systems fail during compression Workflow issues Nextflow stage-2 run cannot find filesAnalysis SLURM submission fails immediatelyRunning on HPC ClustersDeploy MDFactory workflows on SLURM-based HPC clustersArchitectureHow the current codebase is organized
MDFactory